provides site-specific variability of multialigned nucleotide and protein sequences

searches for over-represented nucleotide patterns in nucleotide sequences

performs pattern matching of complex nucleotide motifs including position weight matrices and secondary structure elements. in large DNA collections

identifies coding and non coding conserved sequence tags through the comparison of two genome sequences

for the prediction of alternatively spliced transcripts through maximum compatibility alignment of genome-transcript data

Internet Resources for sequence analysis of 5' and 3' untranslated regions of eukaryotic mRNAs

searches for over-represented gene arrangements

for the discovery of conserved sequence/structural motifs in unaligned RNA sequences

extracts and and analyzes specific sequence subset defined by feature annotations

calculates a score for the translation start context randing from 0 (worst) to 1 (best)

Text Mining Tool for the extraction of publications describing UTR functional motifs